The Molecular Structure of a Forest Aroma Deconstructed

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Researchers determine the molecular structure of alpha-pinene, a compound produced by pine trees that's important for air quality and climate.

 Elias M. Neeman, including the picture of the forestWASHINGTON, D.C., December 7, 2017 -- The fresh, unmistakable scent of a pine forest comes from a medley of chemicals produced by its trees. Researchers have now, for the first time, accurately determined the chemical structure of one of these compounds in its gas phase, a molecule called alpha-pinene, which is also produced by tropical forests. The new analysis can help scientists better detect and understand how alpha-pinene -- and potentially other similar molecules -- react with other gases in the atmosphere, a process which produces pollutants and particles called aerosols that affect health and climate. 

"What you smell in the forest are biogenic volatile organic molecules emitted into the atmosphere," said Thérèse Huet, a physicist at University of Lille in France. She and her colleagues describe their analysis this week in The Journal of Chemical Physics, from AIP Publishing. Determining the structure of these molecules, she said, "is paving the way for future spectroscopic detection and atmospheric chemistry modeling." 

Among biogenic volatile organic molecules is a class of compounds called monoterpenes, which react with ozone, hydroxyl radicals, nitrogen oxides, and other gases in the atmosphere. These reactions create pollutants and aerosols, which, for example, can seed the condensation of more clouds and help cool the climate. The main monoterpene is alpha-pinene, of which forests release about 50 trillion grams each year into the atmosphere's lowest layer, the troposphere. 

To accurately predict how alpha-pinene reacts in the troposphere, and thus how it affects climate and air quality, researchers need a detailed understanding of its molecular structure. Alpha-pinene in its solid phase has an already determined bicylic or two-ring structure. In the troposphere, however, alpha-pinene is a gas and is found to have notable changes in structure due to forces exerted by the crystal structure. 

Because alpha-pinene exists in the gas phase only at low concentrations, requiring highly sensitive experimental techniques, no one had previously identified its gas-phase structure. "Up to now, structure determination of complex molecules such as monoterpenes was only possible in the condensed phase," Huet said. 

Huet's lab developed methods sensitive enough to determine the structure of monoterpene gases. 

The researchers identified quantum parameters called rotational constants that best describe the data with no structural assumptions. They repeated this analysis for all naturally occurring isotopic versions of alpha-pinene, in which carbon-13 isotopes replace different carbon-12 isotopes in the molecule. This set of rotational constants describes the complete structure of alpha-pinene gas. 

Their technique, Huet said, can also be used for other monoterpenes. Now that the researchers have the structure of alpha-pinene, they are better able to model the first steps of nature’s aerosol formation in the atmosphere. 


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Article title: 
Elias M. Neeman, Juan Ramón Avilés Moreno and Thérèse R. Huet
Author affiliations: 
University of Lille and Universidad Pablo de Olavide
About the journal: 

The Journal of Chemical Physics

The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics.